Read in a COSMIC file and format it for usage in TMBleR

The objective of this script is to convert a COSMIC .vcf file into a R object

formatCOSMIC(input_file, assembly, output_file = "COSMIC")

Arguments

input_file

path to CosmicCodingMuts.vcf file downloaded following the vignette instructions
assembly

either hg19 or hg38
output_file

path to where to save the converted .vcf file into a .rda

Value

nothing