Annotate TMB dataframe with clinical outcome

Add a new column to the dataframe with the clinical outcome

annotateTMB(TMB_df, ClinicalData)

Arguments

TMB_df	output from applyTMB()
ClinicalData	Simple dataframe with at least two columns, a Sample column and a ClinicalResponder colum

Value

annotate dataframe which combines both TMB and clinical responders

Examples

# Import datasets
data(TMB_VanAllen)
data("VanAllen_Clinical")
# Annotate TMB with clinical reponse
TMB_clincal_response <- annotateTMB(TMB_df = TMB_VanAllen, ClinicalData = VanAllen_Clinical )