Panel-based TMB to use as input to the correlateTMBvalues and plotCorrelation functions in tests

Table containing estimated tumor mutational burden and metadata (smaple, filter, size of the sequenced genomic space) obtained by simulating in silico the TMB that would be estimated using a certain panel design.

TMBs_SimulatedPanel

Format

A data frame with 4 rows and 5 variables

Sample

factor, sample identifier

Filter

factor, type of filter, if any, applied on input mutations

Sequencing_Size

numeric vector, genomic size targeted by the sequencing experiment (WES or Panel), in Mb

Tot_Number_Mutations

numeric vector, tumor mutational burden in the targeted genomic region

TMB_per_Mb

numeric vector, global tumor mutational burden expressed as number of mutations

Source

generated in house as an example of TMB estimated obtained by simulating in silico the TMB that would be estimated using a certain panel design.