Mutations in VCF format from WES sequencing of 4 samples

ExampleWESvcfs

Format

A list of four elements (corresponding to 4 samples). Each element is a CollapsedVCF object.

fixed

dataframe with REF, ALT, QUAL, FILTER

info

dataframe with data in INFO field of VCF

rowRanges

GRanges object with chromosome, start and end coordinates, strand

colData

dataframe with sample name

assays

Reference class object of class "ShallowSimpleListAssays", describing fields in INFO of VCF

elementMetadata

dataframe

NAMES

NULL

metadata

dataframe with metadata of VCF

Source

in house examples of WES vcfs.