Dataset containing example vcf from WES — ExampleWESvcfs • TMBleR

Mutations in VCF format from WES sequencing of 4 samples

ExampleWESvcfs

Format

A list of four elements (corresponding to 4 samples). Each element is a CollapsedVCF object.

fixed: dataframe with REF, ALT, QUAL, FILTER
info: dataframe with data in INFO field of VCF
rowRanges: GRanges object with chromosome, start and end coordinates, strand
colData: dataframe with sample name
assays: Reference class object of class "ShallowSimpleListAssays", describing fields in INFO of VCF
elementMetadata: dataframe
NAMES: NULL
metadata: dataframe with metadata of VCF

in house examples of WES vcfs.