Dataset containing sequencing design of a panel

Sequencing design of the panel used as examples.

ExamplePaneldesign

Format

A GRanges object with 8320 ranges and 2 metadata columns

seqnames

Chromosome name

ranges

Start-End genomic positions

strand

'+', '-' or '*' for undefined

V4

hgnc gene symbol and start-end cooridnates

V6

hgnc gene symbol and Pool (1 or 2)

Source

In house panel design, provided as example. design_file_path = system.file( "data-raw" , "ExamplePaneldesign.bed" , package = "TMBleR" , mustWork = TRUE)

design <- readDesign( filename = design_file_path , assembly = "hg19 , ids = "entrezgene_id")